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Coincidentally, we have a new algorithm (HullRad) that calculates hydrodynamic parameters that went online at BJ today. We wrote this because we wanted a program we could eventually call from simulations. HullRad is easy and fast to use, and the results are
very comparable to the previous algorithms published by the pioneers in this field, including Jose Garcia de la Torre, Mattia Rocco and Olwyn Byron.
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<div class="">HullRad has an online web version, and the code is also available
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<div class=""><a href="http://www.cell.com/biophysj/fulltext/S0006-3495(18)30065-1" class="">http://www.cell.com/biophysj/fulltext/S0006-3495(18)30065-1</a></div>
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<div class=""><a href="https://hullrad.wordpress.com/" class="">https://hullrad.wordpress.com</a></div>
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<div class="">Sincerely,</div>
<div class="">Karen F.</div>
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<div class="">**************************************************************************</div>
<div class="">Karen Fleming, PhD</div>
<div class="">Professor</div>
<div class="">TC Jenkins Department of Biophysics</div>
<div class=""><a href="http://genderequityinscience.wordpress.com" class="">GenderEquityinScience.Wordpress.Com</a></div>
<div class="">Johns Hopkins University</div>
<div class="">3400 N Charles Street</div>
<div class="">Baltimore, MD 21218</div>
<div class="">Voice: 410-516-7256</div>
<div class=""><a href="mailto:karen.fleming@jhu.edu" class="">karen.fleming@jhu.edu</a></div>
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<div class="">On Feb 27, 2018, at 11:56 AM, Ronald Toth <<a href="mailto:toth.ronald@gmail.com" class="">toth.ronald@gmail.com</a>> wrote:</div>
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<p class="MsoNormal">Hi all,</p>
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<p class="MsoNormal">I’m interested in predicting a frictional ratio given a *.pdb model. Is HYDRO my only option to do this or is there a simpler way that I’m missing? As far as I can tell SOLPRO will take a *.sol file and calculate a frictional ratio, and
HYDROPRO will take a *.pdb and do some calculations, but HYDROPRO does not output a *.sol file and I get read errors trying to give SOLPRO the output of HYDROPRO.</p>
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<p class="MsoNormal">Thanks in advance for your help! - Ron</p>
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