[RASMB] *.pdb -> F/F0

Ronald Toth toth.ronald at gmail.com
Wed Feb 28 13:12:49 PST 2018


Thanks Everyone, that worked perfectly!

On Tue, Feb 27, 2018 at 12:32 PM Karen Fleming <Karen.Fleming at jhu.edu>
wrote:

> Coincidentally, we have a new algorithm (HullRad) that calculates
> hydrodynamic parameters that went online at BJ today. We wrote this because
> we wanted a program we could eventually call from simulations. HullRad is
> easy and fast to use, and the results are very comparable to the previous
> algorithms published by the pioneers in this field, including Jose Garcia
> de la Torre, Mattia Rocco and Olwyn Byron.
>
> HullRad has an online web version, and the code is also available
>
> http://www.cell.com/biophysj/fulltext/S0006-3495(18)30065-1
>
>
> https://hullrad.wordpress.com
>
> Sincerely,
> Karen F.
>
> **************************************************************************
> Karen Fleming, PhD
>
> <https://maps.google.com/?q=3400+N+Charles+Street+%0D%0A+Baltimore,+MD+21218&entry=gmail&source=g>
> Professor
> TC Jenkins Department of Biophysics
> GenderEquityinScience.Wordpress.Com
> <http://genderequityinscience.wordpress.com>
> Johns Hopkins University
> 3400 N Charles Street
> <https://maps.google.com/?q=3400+N+Charles+Street+%0D%0A+Baltimore,+MD+21218&entry=gmail&source=g>
> Baltimore, MD 21218
> <https://maps.google.com/?q=3400+N+Charles+Street+%0D%0A+Baltimore,+MD+21218&entry=gmail&source=g>
> Voice: 410-516-7256 <(410)%20516-7256>
> karen.fleming at jhu.edu
>
>
>
>
>
>
> On Feb 27, 2018, at 11:56 AM, Ronald Toth <toth.ronald at gmail.com> wrote:
>
> Hi all,
>
>
> I’m interested in predicting a frictional ratio given a *.pdb model. Is
> HYDRO my only option to do this or is there a simpler way that I’m missing?
> As far as I can tell SOLPRO will take a *.sol file and calculate a
> frictional ratio, and HYDROPRO will take a *.pdb and do some calculations,
> but HYDROPRO does not output a *.sol file and I get read errors trying to
> give SOLPRO the output of HYDROPRO.
>
>
> Thanks in advance for your help! - Ron
>
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>
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