[RASMB] Interpreting SV and SE data
Eric Salgado
esalgado at popmail.ucsd.edu
Thu May 29 10:54:42 PDT 2008
Hello all,
I have a system for which I've done SV experiments at multiple
concentrations that, on increasing the concentration, reveals a peak
that starts at an s value of about 2, shifts to a plateau between 2.4
and 2.6, then steadily increases at 2.6. I should point out that all of
these peaks are very broad.
The c(MW) analysis describes a monomer at low concentrations; dimer
at intermediate concentrations; something between dimer and trimer at
high concentrations; and finally, as an aggregate starts to form at
very high concentrations, a trimer peak is resolved. This trimer peak
correlates to our crystal structure, but it appears as if, because of
the apparently low association constant and fast kinetics involved with
the trimer formation, this fact is masked in the SV data.
In order to hopefully rid of this ambiguity, I performed SE
experiments in the concentration regime that did not form an aggregate
(and therefore apparently only a small amount of trimer), but find that,
as far as a species analysis goes, both a model with monomer-dimer or
monomer-dimer-trimer present are statistically equal. That being said,
the statistics are lower for the later model, while the fit and
residuals for both are equally good.
With all of this in hand, how can I determine the best SE model to
use, and can I say with certainty that the trimer exists in solution
from these data?
I know this is a lot, but I would appreciate any help I can get with
this problem.
Thank you in advance,
Eric Salgado
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