[RASMB] back to reality
Ariel Lustig
ariel.lustig at bluewin.ch
Wed Sep 29 12:00:01 PDT 2004
Dear colleauges, lets come back to reality
At least for new-comers , but not only for them, the subject of predicting or better , calculating the time to achieve equilibrium makes no / or only very little sense , since as I belive that every one of us use the
"overspeed procedure" discribed by Hexner, Radford and Beams PNAS (1961), 47,1848 that reduces time to achieve equilibrium to 50% or more. If so, I ask myself what means time to equilibrium ? from the time rotor speed is achieved and not yet a concentration gradient is established, or a steep graient at both solution column ends? all non -sense ! I agree that for polydispersed or selfassociating systems
using an overspeed procedure is difficult (and dangrous especially it some parts are not reversible), but not less difficult as to calculate time to equilibrium as you suggested of a non monodispersed systeme.
In FRACTION N° 1 1967 issued by Beckman Instruments ( may be based on the same equation
that Walter Stafford mentioned recently) K.E Van Holde discribed a formula where the time depends on Diffusion ! and here again to new-comers. If at all making the exercise to calculate time to equilibrium.
It is to use Dobs and not D20w that is correected for Viscosity of water. There may be a huge difference
between the two Diffusion values if per example you use sucrose in the buffer as I do measuring
membrane proteins. The density has no influence for Diffusion only the viscosity of the solvent.
yours....ariel
ariel.lustig at bluewin.ch
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